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CyVerse Self-Guided Course

This self-guided course will take you through the basics of using CyVerse USA.


Tutorial Maintainer(s)

Who to contact if this guide needs fixing. You can also email learning@cyverse.org

Maintainer Institution Contact
Michael Culshaw-Maurer University of Arizona culshawmaurer@arizona.edu
Jason Williams Cold Spring Harbor Laboratory williams@cshl.edu
Tyson Lee Swetnam University of Arizona tswetnam@cyverse.org

Table of Contents

Perequisites

Downloads, access, and services

In order to complete this tutorial you will need access to the following services/software

Prerequisite Preparation Notes Link/Download
CyVerse account You will need a CyVerse account to complete this exercise User Portal
VICE Access You must have permission to use Discovery Environment VICE applications; request access on the user portal (under 'Services') Request Access
CyberDuck 3rd party software for upload/download to Data Store Download Windows & Mac OS X only

Platform(s)

We will use the following CyVerse platform(s):

Platform Interface Link Platform Tour
DS Data Store GUI & CLI Data Store Data Store Guide
DE Discovery Environment GUI DE DE Guide

Application(s) used

Discovery Environment App(s):

App Name Version Description App Link Notes/Other
Muscle 3.8.31 Multiple Sequence Alignment MUSCLE Manual
RStudio Verse Latest Rocker-Project RStudio CyVerse Docker Image
Tip

See other versions of this documentation (CyVerse UK and CyVerse Austria) In the lower-left hand side of the screen, change the version of this documentation from cyverse-us to one of the other documentation sets developed for this online guide (cyverse-uk or cyverse-at) to see specifics for those installations.


Funding and Citations:

CyVerse is funded entirely by the National Science Foundation NSF under Award Numbers:

NSF-0735191 NSF-1265383 NSF-1743442

Please cite CyVerse appropriately when you make use of our resources, see CyVerse citation policy.


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